Beginning Perl for Bioinformatics

Description

Biology, it seems, is a good showcase for the talents of Perl. Newcomers to Perl who understand biological information will find James Tisdall’s Beginning Perl for Bioinformatics to be an excellent compendium of examples. Teachers of Perl will likewise find the text to be filled with fresh programming illustrations of growing scientific importance. Seasoned Perlmongers who want to learn biology, however, should search elsewhere, as Tisdall’s emphasis is on Perl’s logic rather than Mother Nature’s.
Departing from O’Reilly’s earlier monograph Developing Bioinformatic Computer Skills, Tisdall’s text is organized aggressively along didactic lines. Nearly all of the 13 chapters begin with twin bullet lists of Perl programming tools and the bioinformatic methods that require them. Likewise, the chapters end with exercises. String concatenation is illustrated with gene splicing, and regular expressions are taught with gene transcription and motif searching.
Tisdall emphasizes sequence examples throughout, leading up to an introduction to a Perl interface for the NIH GenBank biological database and the widely used BLAST sequence alignment tool. After a brief discussion of three-dimensional protein structure, he returns to sequence extraction and secondary structure prediction.
Tisdall’s goal is to boost the beginning programmer into a domain of self-learning. He imparts essential etiquette for the success of programming newbies: use the wealth or resources available, from user documentation to Web site surveys to FAQs to How-To’s to news groups and finally to direct personal appeals for help from a senior colleague. A well-plugged-in bioinformatics Perl student will soon discover Bioperl, an open-source effort to bring research-grade bioinformatic tools to the Perl community. Bioperl is described briefly at the end of Tisdall’s book and will reportedly be a forthcoming title of its own in the O’Reilly bioinformatics series.
Although he introduces bioinformatics as an academic discipline, Tisdall treats it as a trade throughout his book. He indicates that open questions and computational hard problems exist, but does not describe what they are or how they are being tackled. Ultimately, Tisdall presents bioinformatics as another arrow in a bench scientist’s quiver, very much like HPLC, 2D-PAGE, and the various spectroscopies.
As odd as a “bioinformatics-as-tool” book may be to its research proponents, the reduction of bioinformatics to trade status both deflates and vindicates the years of research, as Tisdall’s work attests. –Peter Leopold

http://www.mytempdir.com/330252
OR
http://rapidshare.de/files/9447069/JTisdall.rar.html
Password: www.AvaxHome.ru

Disclaimer:
Contents of this page are indexed from the Internet. All actions are under your responsability. Email us to report illegal contents or external links and we'll remove them immediately.

Please check the description for download links if any or do a search to find alternative books.

Can't Download?
Please search mirrors if you can't find download links for "Beginning Perl for Bioinformatics" in "Description" and someone else may update the links. Check the comments when back to find any updates.

Search Mirrors
Maybe some mirror pages will be helpful, search this book at top of this page or click here to find more info.

1. Ebooks list page : 341
2. James Tisdall, "Beginning Perl for Bioinformatics"
3. O\'Reilly - Beginning Perl for Bioinformatics ISBN 0596000804
4. Beginning Perl for Bioinformatics
5. Bioinformatics Biocomputing and Perl: An Introduction to Bioinformatics Computing Skills and Practice
6. Mastering Perl for Bioinformatics
7. Mastering Perl for Bioinformatics (Repost)
8. Mastering Perl for Bioinformatics by James D. Tisdall
9. Genomic Perl: From Bioinformatics Basics to Working Code
10. Genomic Perl: From Bioinformatics Basics to Working Code
11. Genomic Perl: From Bioinformatics Basics to Working Code
12. Mastering Perl for Bioinformatics
13. Beginning Perl
14. Beginning Perl
15. Beginning Perl
16. Beginning Perl Web Development: From Novice to Professional